Projects
bioproject_accession |
project_goal |
center_name |
release_date |
library_count |
total_reads |
non_human_reads |
|---|---|---|---|---|---|---|
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJDB10068/>PRJDB10068</a> |
Microbial contamination pattern of contact lens care solutions used by allergic conjunctivitis patients. |
KAGAWA |
2020-06-27 |
15 |
1,800,000 |
1,797,188 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJDB10133/>PRJDB10133</a> |
Presence of acanthamoeba and diversified bacterialflora in poorly maintained contact lens cases. |
KAGAWA |
2022-07-01 |
59 |
5,979,204 |
5,967,470 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJDB15234/>PRJDB15234</a> |
Disturbances in the Ocular Surface Microbiome by Perioperative Antimicrobial Eye Drops. |
KAGAWA |
2023-02-13 |
64 |
4,370,400 |
3,795,562 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJEB21503/>PRJEB21503</a> |
Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid |
NATIONAL FOOD INSTITUTE - DTU |
2017-11-08 |
71 |
9,693,283 |
19,338,914 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJEB55147/>PRJEB55147</a> |
Trial reads from ocular swabs and cultures in human and mice, method paper and microbial community standards |
INSELSPITAL |
2023-08-29 |
424 |
15,040,297,849 |
338,032,918 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1010661/>PRJNA1010661</a> |
To investigate the metagenomic characteristics of ocular surface microorganisms in diabetic children with dry eye in Shanghai. |
Shanghai General Hospital, Nanjing Medical University |
2023-08-23 |
30 |
1,322,684,276 |
1,412,568 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1036535/>PRJNA1036535</a> |
Analysis of Virus and Colonized Bacteria in Ocular Surface Squamous Neoplasia |
TONGJI HOSPITAL, TONGJI MEDICAL COLLEGE, HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY |
2023-11-09 |
6 |
336,846,735 |
44,245,183 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1044261/>PRJNA1044261</a> |
human eye metagenome Raw sequence reads |
HENAN PROVINCIAL PEOPLE’S HOSPITAL |
2023-11-23 |
70 |
3,563,156 |
3,393,630 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1048173/>PRJNA1048173</a> |
Ocular surface metagenome |
SHANGHAI GENERAL HOSPITAL, NANJING MEDICAL UNIVERSITY |
2023-12-04 |
318 |
84,119,548 |
83,416,800 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1048377/>PRJNA1048377</a> |
Longitudinal changes of ocular surface microbiome in patients undergoing hemopoietic stem cell transplant (HSCT) |
NATIONAL RESEARCH COUNCIL (CNR) |
2023-12-19 |
48 |
6,026,374 |
5,816,568 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1077663/>PRJNA1077663</a> |
The Alterations of Ocular Surface Microbiota Facilitate the Progression of Myopia |
XIANGYA HOSPITAL |
2024-02-21 |
67 |
11,684,224 |
11,490,742 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA306497/>PRJNA306497</a> |
Conjunctival Microbiome Raw sequence reads |
UNIVERSITY OF WASHINGTON |
2015-12-18 |
3 |
13,256,860 |
940,636 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA328002/>PRJNA328002</a> |
Eye metagenome Raw sequence reads |
UCSF |
2016-07-16 |
8 |
118,804 |
117,458 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA381365/>PRJNA381365</a> |
Diagnosing corneal infections in formalin fixed specimens using next generation sequencing |
JOHNS HOPKINS SCHOOL OF MEDICINE |
2021-02-22 |
20 |
105,750,483 |
200,831,754 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA398289/>PRJNA398289</a> |
human and microbial Raw sequence reads in intraocular samples |
ZHONGSHAN OPHTHALMIC CENTER (ZOC) |
2018-02-05 |
225 |
8,660,493,124 |
3,409,799,314 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA415338/>PRJNA415338</a> |
Collection of biosamples from conjunctiva Metagenome |
VSION RESEARCH FOUNDATION |
2017-10-27 |
1 |
2,675,198 |
2,661,985 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA429692/>PRJNA429692</a> |
Infectious Etiology of Age-related Macular Degeneration |
ZHONGSHAN OPHTHALMIC CENTER (ZOC) |
2018-02-08 |
236 |
9,057,636,897 |
3,764,157,181 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA486134/>PRJNA486134</a> |
Investigation of microbial pathogens in ocular adnexal extranodal marginal zone B-cell lymphoma |
UNIVERSITY OF COPENHAGEN |
2018-08-27 |
18 |
16,047,590 |
8,187,300 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA564695/>PRJNA564695</a> |
Composition and diversity of microbial diversity on the ocular surface of patients with MGD |
SHANDONG EYE INSTITUTE |
2019-09-10 |
89 |
3,192,000 |
3,011,992 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA610482/>PRJNA610482</a> |
Homo sapiens Metagenome Raw sequence reads |
SHANGHAI INSTITUTES FOR BIOLOGICAL SCIENCES |
2020-03-28 |
55 |
4,293,332,268 |
521,365,002 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA629667/>PRJNA629667</a> |
human eye metagenome Metagenome |
EYE AND EAR, NOSE, AND THROAT HOSPITAL OF FUDAN UNIVERSITY |
2020-05-21 |
273 |
16,368,813 |
16,368,195 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA642342/>PRJNA642342</a> |
microbiota from eye swab Raw sequence reads |
CHULALONGKORN UNIVERSITY |
2020-07-05 |
27 |
4,873,148 |
4,831,608 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA646315/>PRJNA646315</a> |
Mycobiome changes in the vitreous of post fever retinitis patients |
L V PRASAD EYE INSTITUTE |
2020-07-15 |
25 |
148,235,949 |
48,893,940 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA689968/>PRJNA689968</a> |
Ocular surface microbiota on human MGD eye Raw sequence reads |
CHULALONGKORN UNIVERSITY |
2021-01-13 |
34 |
6,150,786 |
6,098,614 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA692666/>PRJNA692666</a> |
Raw sequence reads of microbiota from corneal scrapings or conjunctival swabs |
STATE KEY LABORATORY CULTIVATION BASE, SHANDONG PROVINCIAL KEY LABORATORY OF OPHTHALMOLOGY |
2021-01-19 |
100 |
2,747,745 |
2,724,693 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA693337/>PRJNA693337</a> |
Effects of Intense Pulsed Light on Tear Film TGF-beta and Microbiome in Ocular Rosacea with Dry Eye |
MAYO CLINIC |
2021-02-04 |
76 |
15,344,074 |
11,732,158 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA695410/>PRJNA695410</a> |
Raw sequence reads of microbiota in conjunctival swabs from patients with microbial keratitis |
STATE KEY LABORATORY CULTIVATION BASE, SHANDONG PROVINCIAL KEY LABORATORY OF OPHTHALMOLOGY |
2021-01-29 |
149 |
5,939,132 |
5,818,745 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA720296/>PRJNA720296</a> |
Effects of sodium hyaluronate eye drops on ocular surface bacterial microbiota |
XIAMEN UNIVERSITY |
2021-04-07 |
64 |
13,741,234 |
13,704,136 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA721101/>PRJNA721101</a> |
human eye metagenome Raw sequence reads |
XI’AN JIAOTONG UNIVERSITY |
2021-04-14 |
41 |
1,906,332 |
1,903,866 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA744578/>PRJNA744578</a> |
16S rDNA sequence of microflora on the ocular surface of patients with blepharitis and keratitis |
NORTHWEST UNIVERSITY |
2021-07-09 |
231 |
36,300,340 |
36,141,318 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA745199/>PRJNA745199</a> |
Metagenomics sequencing of infectious microbes from ocular sarcoidosis tissue specimens |
JOHNS HOPKINS UNIVERSITY |
2021-07-09 |
20 |
62,697,330 |
56,122,402 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA749068/>PRJNA749068</a> |
Microbiome in orbital fat under thyroid associated ophthalmopathy |
BEIJING TONGREN HOSPITAL, CAPITAL MEDICAL UNIVERSITY |
2021-07-26 |
109 |
20,120,020 |
20,046,432 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA802336/>PRJNA802336</a> |
Systematic Cross-biospecimen evaluation of DNA extraction kits for long- and short-read multi-metagenomic sequencing studies |
CENTER FOR BIOINFORMATICS |
2022-02-02 |
31 |
2,416,293,619 |
1,170,561,861 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA807746/>PRJNA807746</a> |
Ocular surface microbiota in patients with thyroid-associated ophthalmopathy Metagenome |
SHANXI EYE HOSPITAL |
2022-02-24 |
105 |
6,423,976 |
4,421,975 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA818470/>PRJNA818470</a> |
Ocular surface mycobiomes in Bacterial Keratitis patients |
L V PRASAD EYE INSTITUTE |
2022-03-24 |
66 |
47,399,930 |
44,427,831 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA819236/>PRJNA819236</a> |
Conjunctival Microbiome Changes of children after Orthokeratology |
EYE HOSPITAL OF SHANDONG FIRST MEDICAL UNIVERSITY |
2022-03-24 |
50 |
8,404,370 |
7,805,870 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA847046/>PRJNA847046</a> |
Human Ocular Metagenome |
FACULTY OF PHARMACY HELWAN UNIVERSITY |
2022-06-28 |
61 |
16,895,456 |
16,325,914 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA879945/>PRJNA879945</a> |
ocular surface microbiota in patients with Demodex blepharitis |
SHANXI EYE HOSPITAL |
2022-09-15 |
42 |
2,717,896 |
1,268,935 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA886972/>PRJNA886972</a> |
Exploratory Study on the Ocular Surface Microbiome and Correlation to Clinical Parameters |
NANYANG TECHNOLOGICAL UNIVERSITY |
2022-10-05 |
26 |
728,912,653 |
111,958,320 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA894103/>PRJNA894103</a> |
Study of meibomian gland microbiome in patients with meibomian gland dysfunction |
MAHIDOL UNIVERSITY |
2022-10-26 |
88 |
7,536,122 |
7,518,242 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA910807/>PRJNA910807</a> |
The Effect of Topical Anesthetics on 16S Ribosomal Ribonucleic Acid Amplicon Sequencing Results in Ocular Surface Microbiome Research |
KU LEUVEN |
2022-12-10 |
40 |
8,029,254 |
1,617,310 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA912096/>PRJNA912096</a> |
Study of microbial diversity of vitreous humor microbicolor in endophthalmitis. |
SHANXI EYE HOSPITAL |
2022-12-15 |
39 |
1,560,697 |
1,448,303 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA912212/>PRJNA912212</a> |
DNA extraction protocol impacts ocular surface microbiome profile |
KU LEUVEN |
2022-12-14 |
76 |
7,657,628 |
4,852,670 |
<a href=https://www.ncbi.nlm.nih.gov/bioproject/PRJNA937315/>PRJNA937315</a> |
Endophthalmitis_metegenomic_study |
CENTRO DE CIENCIAS GENOMICAS - UNIVERSIDAD NACIONAL AUTONOMA DE MEXICO |
2023-02-24 |
9 |
653,535,328 |
19,189,202 |