Samples: Air

omc_id

sample_name

non_human_reads

total_reads

kraken_human_reads

collection_date

visit_number

biosample_type

biosample_site

biosample_side

biosample_alias

collection_medium_tube

tube_lot

added_medium

added_medium_lot

swab_type

swab_lot

extraction_kit

lysozyme_treatment

sample_volume

host_depletion

host_depletion_kit

nucleic_acid_concentration

sequencing_date

seq_plate_number

seq_batch_plate_location

seq_plate_location

sequencing_lane

individual_id

microbial_standard

jhu00001

Molzym_Ultra_Deep_Air_Ctr_3_S20

20011346

96531668

88940

Air Control

S20

Molzym Ultra-Deep Microbiome Prep

0.0

50 ul

6.3 ng/ul

2024-03-14

S1273-SC1 A03

0

jhu00003

Qiagen_DNeasy_Air_Ctr_3_S10

10826216

104869722

75860

Air Control

S10

Qiagen DNeasy Blood & Tissue Kit

0.0

50 ul

1.2 ng/ul

2024-03-14

S1273-SC1 A11

0

jhu00005

Qiagen_Soil_Air_Ctr_3_S2

9158

1435514

240

Air Control

S2

Qiagen DNeasy PowerMax Soil Kit

0.0

200 ul

0 ng/ul

2024-03-14

S1273-SC1 A07

L008

0

jhu00007

Thermo_MagMax_Air_Ctr_3_S21

55599904

120616586

44822

Air Control

S21

Thermo Fisher MagMAX™ Pathogen RNA/DNA Kit

0.0

50 ul

2.8 ng/ul

2024-03-14

S1273-SC1 B07

0

jhu00009

Zymo_Magbead_Air_Ctr_3_S4

115912474

119460566

13402

Air Control

S4

Zymo Magbead Kit

0.0

50 ul

0.1 ng/ul

2024-03-14

S1273-SC1 B11

0

jhu00011

Zymo_Mini_prep_Air_Ctr_3_S19

99954906

103333064

6318

Air Control

S19

Zymo Mini Prep Kit

0.0

50 ul

1.8 ng/ul

2024-03-14

S1273-SC1 B03

0

jhu00013

MasterPure_Air_Ctr_3_S34

36515148

44345252

11394

Air Control

S34

MasterPure Gram Positive DNA Purification Kit

0.0

50 ul

10.6 ng/ul

2024-07-15

S1289-SC1 A03

0

jhu00015

MasterPure_Lysol_Air_Ctr_3_S38

36155068

46271732

18016

Air Control

S38

MasterPure Gram Positive DNA Purification Kit

1.0

50 ul

20.6 ng/ul

2024-07-15

S1289-SC1 A07

0

jhu00017

MasterPure_MolYsis_Basic_5_Air_Ctr_3_S42

3912870

5026718

1380

Air Control

S42

MasterPure Gram Positive DNA Purification Kit

0.0

35 ul

MolYsis™ Basic7

12 ng/ul

2024-07-15

S1289-SC1 A11

0

jhu00019

MasterPure_NEB_Air_Ctr_3_S46

106449728

112059042

15020

Air Control

S46

MasterPure Gram Positive DNA Purification Kit

0.0

35 ul

NEBNext Microbiome DNA Enrichment Kit

4.9 ng/ul

2024-07-15

S1289-SC1 B03

0

jhu00021

MasterPure_Zymo_HostZero_200ul_Air_Ctr_3_S29

1872412

2585732

3238

Air Control

S29

MasterPure Gram Positive DNA Purification Kit

0.0

35 ul

Zymo HostZero

20.2 ng/ul

2024-07-15

S1289-SC1 B07

0

jhu00050

Qiagen_Dneasy_CS_001_Air_Swab_S39

19466274

21096976

2992

Air control

S39

Qiagen DNeasy Blood_Tissue Kit

0.0

30 ul

1.9 ng/ul

2024-10-28

S1304-SC1 D01

L008

1.0

0

jhu00052

Qiagen_Dneasy_CS_002_Air_Swab_S62

17287152

21155362

4864

Air control

S62

Qiagen DNeasy Blood_Tissue Kit

0.0

30 ul

3.7 ng/ul

2024-10-28

S1304-SC1 D03

L008

2.0

0

jhu00054

Qiagen_Dneasy_CS_003_Air_Swab_S18

23776060

24728334

2130

Air control

S18

Qiagen DNeasy Blood_Tissue Kit

0.0

30 ul

1.3 ng/ul

2024-10-28

S1304-SC1 D05

L008

3.0

0

jhu00056

Qiagen_Dneasy_CS_004_Air_Swab_S52

10036688

10728174

2332

Air control

S52

Qiagen DNeasy Blood_Tissue Kit

0.0

30 ul

7.6 ng/ul

2024-10-28

S1304-SC1 D07

L008

4.0

0

jhu00058

Qiagen_Dneasy_CS_005_Air_Swab_S67

22989908

25064268

3794

Air control

S67

Qiagen DNeasy Blood_Tissue Kit

0.0

30 ul

4.3 ng/ul

2024-10-28

S1304-SC1 D09

L008

5.0

0

jhu00060

Qiagen_Dneasy_CS_006_7_8_Air_Swab_S51

25010940

37809840

12658

Air control

S51

Qiagen DNeasy Blood_Tissue Kit

0.0

30 ul

1.6 ng/ul

2024-10-28

S1304-SC1 E01

L008

6.0

0

jhu00064

Qiagen_Dneasy_CS_009_10_Air_Swab_S48

21586716

24144798

4374

Air control

S48

Qiagen DNeasy Blood_Tissue Kit

0.0

30 ul

5.6 ng/ul

2024-10-28

S1304-SC1 E04

L008

9.0

0

jhu00070

Zymo_Mini_Prep_CS_001_Air_Swab_S8

6289604

7730612

1050

Air control

S8

Zymo Mini Prep Kit

0.0

50 ul

0.9 ng/ul

2024-10-28

S1304-SC1 E11

L008

1.0

0

jhu00072

Zymo_Mini_Prep_CS_002_Air_Swab_S64

8866476

11020392

1782

Air control

S64

Zymo Mini Prep Kit

0.0

50 ul

3.1 ng/ul

2024-10-28

S1304-SC1 F01

L008

2.0

0

jhu00074

Zymo_Mini_Prep_CS_003_Air_Swab_S77

16422312

17980312

1704

Air control

S77

Zymo Mini Prep Kit

0.0

50 ul

1 ng/ul

2024-10-28

S1304-SC1 F03

L008

3.0

0

jhu00076

Zymo_Mini_Prep_CS_004_Air_Swab_S66

5449960

6724258

878

Air control

S66

Zymo Mini Prep Kit

0.0

50 ul

0.1 ng/ul

2024-10-28

S1304-SC1 F05

L008

4.0

0

jhu00078

Zymo_Mini_Prep_CS_005_Air_Swab_S30

17758420

18836418

1612

Air control

S30

Zymo Mini Prep Kit

0.0

50 ul

2.2 ng/ul

2024-10-28

S1304-SC1 F07

L008

5.0

0

jhu00080

Zymo_Mini_Prep_CS_006_7_8_Air_Swab_S14

7536196

8949636

1032

Air control

S14

Zymo Mini Prep Kit

0.0

50 ul

1.8 ng/ul

2024-10-28

S1304-SC1 F11

L008

6.0

0

jhu00084

Zymo_Mini_Prep_CS_009_10_Air_Swab_S73

8838152

10006514

948

Air control

S73

Zymo Mini Prep Kit

0.0

50 ul

2.2 ng/ul

2024-10-28

S1304-SC1 G02

L008

9.0

0

jhu00101

11_Zymo_Micro_Prep_CS_007_Air_Swab_S91

825688

3833154

3120

Air control

S91

Zymo Micro Prep Kit

20 ul

0.9 ng/ul

2025-03-14

S1289-SC2 A11

L008

7.0

False

jhu00102

12_Zymo_Micro_Prep_CS_010_Air_Swab_S92

1183850

3207752

2868

Air control

S92

Zymo Micro Prep Kit

20 ul

1.3 ng/ul

2025-03-14

S1289-SC2 A12

L008

10.0

False

jhu00116

25_Qiagen_Soil_Pro_CS_007_Air_Swab_S9

765962

6053986

9810

Air control

S9

Qiagen PowerSoil Pro Kits

30 ul

6.3 ng/ul

2025-03-14

S1289-SC2 C01

L008

7.0

False

jhu00117

26_Qiagen_Soil_Pro_CS_010_Air_Swab_S10

351816

3261946

3954

Air control

S10

Qiagen PowerSoil Pro Kits

30 ul

8 ng/ul

2025-03-14

S1289-SC2 C02

L008

10.0

False