Samples: Air

omc_id

sample_name

non_human_reads

total_reads

kraken_human_reads

sequencing_date

biosample_site

extraction_kit

batch_number

batch_plate_location

biosample_alias

biosample_side

collection_date

collection_medium

experiment_number

host_depletion

host_depletion_kit

individual_id

lane_number

lysozyme_treatment

microbial_standard

nucleic_acid_concentration

plate_location

plate_number

sample_volume

sequencing_lane

stabilizing_fluid

stabilizing_fluid_lot

swab_type

tube_lot

visit_number

jhu00001

Molzym_Ultra_Deep_Air_Ctr_3_S20

20011346

96531668

88940

2024-03-14

Air Control

Molzym Ultra-Deep Microbiome Prep

S1273-SC1 A03

S20

False

0

6.3 ng/ul

50 ul

jhu00003

Qiagen_DNeasy_Air_Ctr_3_S10

10826216

104869722

75860

2024-03-14

Air Control

Qiagen DNeasy Blood & Tissue Kit

S1273-SC1 A11

S10

False

0

1.2 ng/ul

50 ul

jhu00005

Qiagen_Soil_Air_Ctr_3_S2

9158

1435514

240

2024-03-14

Air Control

Qiagen DNeasy PowerMax Soil Kit

S1273-SC1 A07

S2

L008

False

0

0 ng/ul

200 ul

jhu00007

Thermo_MagMax_Air_Ctr_3_S21

55599904

120616586

44822

2024-03-14

Air Control

Thermo Fisher MagMAX™ Pathogen RNA/DNA Kit

S1273-SC1 B07

S21

False

0

2.8 ng/ul

50 ul

jhu00009

Zymo_Magbead_Air_Ctr_3_S4

115912474

119460566

13402

2024-03-14

Air Control

Zymo Magbead Kit

S1273-SC1 B11

S4

False

0

0.1 ng/ul

50 ul

jhu00011

Zymo_Mini_prep_Air_Ctr_3_S19

99954906

103333064

6318

2024-03-14

Air Control

Zymo Mini Prep Kit

S1273-SC1 B03

S19

False

0

1.8 ng/ul

50 ul

jhu00013

MasterPure_Air_Ctr_3_S34

36515148

44345252

11394

2024-07-15

Air Control

MasterPure Gram Positive DNA Purification Kit

S1289-SC1 A03

S34

False

0

10.6 ng/ul

50 ul

jhu00015

MasterPure_Lysol_Air_Ctr_3_S38

36155068

46271732

18016

2024-07-15

Air Control

MasterPure Gram Positive DNA Purification Kit

S1289-SC1 A07

S38

True

0

20.6 ng/ul

50 ul

jhu00017

MasterPure_MolYsis_Basic_5_Air_Ctr_3_S42

3912870

5026718

1380

2024-07-15

Air Control

MasterPure Gram Positive DNA Purification Kit

S1289-SC1 A11

S42

MolYsis™ Basic7

False

0

12 ng/ul

35 ul

jhu00019

MasterPure_NEB_Air_Ctr_3_S46

106449728

112059042

15020

2024-07-15

Air Control

MasterPure Gram Positive DNA Purification Kit

S1289-SC1 B03

S46

NEBNext Microbiome DNA Enrichment Kit

False

0

4.9 ng/ul

35 ul

jhu00021

MasterPure_Zymo_HostZero_200ul_Air_Ctr_3_S29

1872412

2585732

3238

2024-07-15

Air Control

MasterPure Gram Positive DNA Purification Kit

S1289-SC1 B07

S29

Zymo HostZero

False

0

20.2 ng/ul

35 ul

jhu00050

Qiagen_Dneasy_CS_001_Air_Swab_S39

19466274

21096976

2992

2024-10-28

Clinical Sample

Qiagen DNeasy Blood_Tissue Kit

S1304-SC1 D01

S39

1

L008

False

0

1.9 ng/ul

30 ul

jhu00052

Qiagen_Dneasy_CS_002_Air_Swab_S62

17287152

21155362

4864

2024-10-28

Clinical Sample

Qiagen DNeasy Blood_Tissue Kit

S1304-SC1 D03

S62

2

L008

False

0

3.7 ng/ul

30 ul

jhu00054

Qiagen_Dneasy_CS_003_Air_Swab_S18

23776060

24728334

2130

2024-10-28

Clinical Sample

Qiagen DNeasy Blood_Tissue Kit

S1304-SC1 D05

S18

3

L008

False

0

1.3 ng/ul

30 ul

jhu00056

Qiagen_Dneasy_CS_004_Air_Swab_S52

10036688

10728174

2332

2024-10-28

Clinical Sample

Qiagen DNeasy Blood_Tissue Kit

S1304-SC1 D07

S52

4

L008

False

0

7.6 ng/ul

30 ul

jhu00058

Qiagen_Dneasy_CS_005_Air_Swab_S67

22989908

25064268

3794

2024-10-28

Clinical Sample

Qiagen DNeasy Blood_Tissue Kit

S1304-SC1 D09

S67

5

L008

False

0

4.3 ng/ul

30 ul

jhu00060

Qiagen_Dneasy_CS_006_7_8_Air_Swab_S51

25010940

37809840

12658

2024-10-28

Clinical Sample

Qiagen DNeasy Blood_Tissue Kit

S1304-SC1 E01

S51

6

L008

False

0

1.6 ng/ul

30 ul

jhu00064

Qiagen_Dneasy_CS_009_10_Air_Swab_S48

21586716

24144798

4374

2024-10-28

Clinical Sample

Qiagen DNeasy Blood_Tissue Kit

S1304-SC1 E04

S48

9

L008

False

0

5.6 ng/ul

30 ul

jhu00070

Zymo_Mini_Prep_CS_001_Air_Swab_S8

6289604

7730612

1050

2024-10-28

Clinical Sample

Zymo Mini Prep Kit

S1304-SC1 E11

S8

1

L008

False

0

0.9 ng/ul

50 ul

jhu00072

Zymo_Mini_Prep_CS_002_Air_Swab_S64

8866476

11020392

1782

2024-10-28

Clinical Sample

Zymo Mini Prep Kit

S1304-SC1 F01

S64

2

L008

False

0

3.1 ng/ul

50 ul

jhu00074

Zymo_Mini_Prep_CS_003_Air_Swab_S77

16422312

17980312

1704

2024-10-28

Clinical Sample

Zymo Mini Prep Kit

S1304-SC1 F03

S77

3

L008

False

0

1 ng/ul

50 ul

jhu00076

Zymo_Mini_Prep_CS_004_Air_Swab_S66

5449960

6724258

878

2024-10-28

Clinical Sample

Zymo Mini Prep Kit

S1304-SC1 F05

S66

4

L008

False

0

0.1 ng/ul

50 ul

jhu00078

Zymo_Mini_Prep_CS_005_Air_Swab_S30

17758420

18836418

1612

2024-10-28

Clinical Sample

Zymo Mini Prep Kit

S1304-SC1 F07

S30

5

L008

False

0

2.2 ng/ul

50 ul

jhu00080

Zymo_Mini_Prep_CS_006_7_8_Air_Swab_S14

7536196

8949636

1032

2024-10-28

Clinical Sample

Zymo Mini Prep Kit

S1304-SC1 F11

S14

6

L008

False

0

1.8 ng/ul

50 ul

jhu00084

Zymo_Mini_Prep_CS_009_10_Air_Swab_S73

8838152

10006514

948

2024-10-28

Clinical Sample

Zymo Mini Prep Kit

S1304-SC1 G02

S73

9

L008

False

0

2.2 ng/ul

50 ul

jhu00101

11_Zymo_Micro_Prep_CS_007_Air_Swab_S91

825688

3833154

3120

2025-03-14

Clinical Sample

Zymo Micro Prep Kit

S1289-SC2 A11

S91

7

L008

False

0.9 ng/ul

20 ul

jhu00102

12_Zymo_Micro_Prep_CS_010_Air_Swab_S92

1183850

3207752

2868

2025-03-14

Clinical Sample

Zymo Micro Prep Kit

S1289-SC2 A12

S92

10

L008

False

1.3 ng/ul

20 ul

jhu00116

25_Qiagen_Soil_Pro_CS_007_Air_Swab_S9

765962

6053986

9810

2025-03-14

Clinical Sample

Qiagen PowerSoil Pro Kits

S1289-SC2 C01

S9

7

L008

False

6.3 ng/ul

30 ul

jhu00117

26_Qiagen_Soil_Pro_CS_010_Air_Swab_S10

351816

3261946

3954

2025-03-14

Clinical Sample

Qiagen PowerSoil Pro Kits

S1289-SC2 C02

S10

10

L008

False

8 ng/ul

30 ul